GUIDE TO INSPECTIONS OF MICROBIOLOGICAL
CONTROL
PHARMACEUTICAL LABORATORIES
QUALITY
Note: This document is reference material for investigators and other FDA
personnel. The document does not bind FDA, and does no confer any rights,
privileges, benefits, or immunities for or on any person(s).
I. INTRODUCTION
The Guide to the Inspection of Pharmaceutical Quality Control Laboratories
provided very limited guidance on the matter of inspection of microbiological laboratories. While that guide addresses many of the issues
associated with the chemical aspect of laboratory analysis of pharmaceuticals, this document will serve as a guide to the inspection of
the microbiology analytical process. As with any laboratory inspection, it
is recommended that an analyst (microbiologist) who is familiar with the
tests being inspected participate in these inspections.
II. MICROBIOLOGICAL TESTING OF NON-STERILE PRODUCTS
For a variety of reasons, we have seen a number of problems associated with
the microbiological contamination of topical drug products, nasal solutions
and inhalation products. The USP Microbiological Attributes Chapter <1111>
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provides little specific guidance other than \"The significance of microorganisms in non-sterile pharmaceutical products should be evaluated in
terms of the use of the product, the nature of the product, and the
potential hazard to the user.\" The USP recommends that certain categories be
routinely tested for total counts and specified indicator microbial
contaminants. For example natural plant, animal and some mineral products
for Salmonella, oral liquids for E. Coli, topicals for P. aeruginosa and S.
Aureus, and articles intended for rectal, urethral, or vaginal administration for yeasts and molds. A number of specific monographs also
include definitive microbial limits.
As a general guide for acceptable levels and types of microbiological
contamination in products, Dr. Dunnigan of the Bureau of Medicine of the FDA
commented on the health hazard. In 1970, he said that topical preparations
contaminated with gram negative organisms are a probable moderate to serious
health hazard. Through the literature and through our investigations, it has
been shown that a variety of infections have been traced to the gram
negative contamination of topical products. The classical example being the
Pseudomonas cepacia contamination of Povidone Iodine products reported by a
hospital in Massachusetts several years ago.
Therefore, each company is expected to develop microbial specifications for
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their non-sterile products. Likewise, the USP Microbial Limits Chapter <61>
provides methodology for selected indicator organisms, but not all
objectionable organisms. For example, it is widely recognized that
Pseudomonas cepacia is objectionable if found in a topical product or nasal
solution in high numbers; yet, there are no test methods provided in the USP
that will enable the identification of the presence of this microorganism.
A relevant example of this problem is the recall of Metaproterenol Sulfate
Inhalation Solution. The USP XXII monograph requires no microbial testing
for this product. The agency classified this as a Class I recall because the
product was contaminated with Pseudomonas gladioli/cepacia. The health
hazard evaluation commented that the risk of pulmonary infection is
especially serious and potentially life-threatening to patients with chronic
obstructive airway disease, cystic fibrosis, and immuno-compromised
patients. Additionally, these organisms would not have been identified by
testing procedures delineated in the general Microbial Limits section of the Compendia.
The USP currently provides for retests in the Microbial Limits section <61>
however there is a current proposal to remove the retest provision. As with
any other test, the results of initial test should be reviewed and
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investigated. Microbiological contamination is not evenly dispersed
throughout a lot or sample of product and finding a contaminant in one
sample and not in another does not discount the findings of the initial
sample results. Retest results should be reviewed and evaluated, and
particular emphasis should be placed on the logic and rationale for
conducting the retest.
In order to isolate specific microbial contaminants, FDA laboratories, as
well as many in the industry, employ some type of enrichment media
containing inactivators, such as Tween or lecithin. This is essential to
inactivate preservatives usually present in these types of product and
provides a better medium for damaged or slow growing cells. Other growth
parameters include a lower temperature and longer incubation time (at least
5 days) that provide a better survival condition for damaged or slow-growing cells.
For example, FDA laboratories use the test procedures for cosmetics in the
Bacteriological Analytical Manual (BAM), 6th Edition, to identify contamination in non-sterile drug products. This testing includes an
enrichment of a sample in modified letheen broth. After incubation, further
identification is carried out on Blood Agar Plates and MacConkey Agar
Plates. Isolated colonies are then identified. This procedure
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allows FDA
microbiologists to optimize the recovery of all potential pathogens and to
quantitate and speciate all recovered organisms. Another important aspect of
procedures used by FDA analysts is to determine growth promotion
characteristics for all of the media used.
The selection of the appropriate neutralizing agents are largely dependent
upon the preservative and formulation of the product under evaluation. If
there is growth in the enrichment broth, transfer to more selective agar
media or suitable enrichment agar may be necessary for subsequent
identification.
Microbiological testing may include an identification of colonies found
during the Total Aerobic Plate Count test. Again, the identification should
not merely be limited to the USP indicator organisms.
The importance of identifying all isolates from either or both Total Plate
Count testing and enrichment testing will depend upon the product and its
intended use. Obviously, if an oral solid dosage form such as a tablet is
tested, it may be acceptable to identify isolates when testing shows high
levels. However, for other products such as topicals, inhalants or nasal
solutions where there is a major concern for microbiological contamination,
isolates from plate counts, as well as enrichment testing, should
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be
identified.
III. FACILITIES, EQUIPMENT, AND
MEDIA
Begin the inspection with a review of analyses being conducted and inspect
the plates and tubes of media being incubated (caution should be exercised
not to inadvertently contaminate plates or tubes of media on test). Be
particularly alert for retests that have not been documented and \"special
projects\" in which investigations of contamination problems have been
identified. This can be evaluated by reviewing the ongoing analyses (product
or environmental) for positive test results. Request to review the previous
day's plates and media, if available and compare your observations to the
recorded entries in the logs. Inspect the autoclaves used for the sterilization of media. Autoclaves may lack the ability to displace steam
with sterile filtered air. For sealed bottles of media, this would not
present a problem. However, for non-sealed bottles or flasks of media,
non-sterile air has led to the contamination of media. In addition,
autoclaving less than the required time will also allow media associated
contaminants to grow and cause a false positive result. These problems may
be more prevalent in laboratories with a heavy workload.
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Check the temperature of the autoclave since overheating can denature and
even char necessary nutrients. This allows for a less than optimal recovery
of already stressed microorganisms. The obvious problem with potential false
positives is the inability to differentiate between inadvertent medium
contamination and true contamination directly associated with the sample tested.
IV. STERILITY TESTING
On 10/11/91, the Agency published a proposed rule regarding the manufacture
of drug products by aseptic processing and terminal sterilization. A list of
contaminated or potentially contaminated drug products made by aseptic
processing and later recalled was also made available. Many of the
investigations/inspections of the recalled products started with a list of
initial sterility test failures. FDA review of the manufacturer's production, controls, investigations and their inadequacies, coupled with
the evidence of product failure (initial sterility test failure) ultimately
led to the action.
The USP points out that the facilities used to conduct sterility tests
should be similar to those used for manufacturing product. The USP states,
\"The facility for sterility testing should be such as to offer no greater a
microbial challenge to the articles being tested than that of an
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aseptic
processing production facility\". Proper design would, therefore, include a
gowning area and pass-through airlock. Environmental monitoring and gowning
should be equivalent to that used for manufacturing product.
Since a number of product and media manipulations are involved in conducting
a sterility test, it is recommended that the inspection include actual
observation of the sterility test even though some companies have tried to
discourage inspection on the grounds that it may make the firm's analyst
nervous. The inspection team is expected to be sensitive to this concern and
make the observations in a manner that will create the least amount of
disruption in the normal operating environment. Nevertheless, such concerns
are not sufficient cause for you to suspend this portion of the inspection.
One of the most important aspects of the inspection of a sterility
analytical program is to review records of initial positive sterility test
results. Request lists of test failures to facilitate review of production
and control records and investigation reports. Particularly, for the high
risk aseptically filled product, initial positive sterility test results and
investigations should be reviewed. It is difficult for the manufacturer to
justify the release of a product filled aseptically that fails an initial
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sterility test without identifying specific problems associated with the
controls used for the sterility test.
Examine the use of negative controls. They are particularly important to a
high quality sterility test. Good practice for such testing includes the use
of known terminally sterilized or irradiated samples as a system control.
Alternatively, vials or ampules filled during media fills have also been used.
Be especially concerned about the case where a manufacturer of aseptically
filled products has never found an initial positive sterility test. While
such situations may occur, they are rare. In one case, a manufacturer's
records showed that they had never found a positive result; their records
had been falsified. Also, the absence of initial positives may indicate that
the test has not been validated to demonstrate that there is no carryover of
inhibition from the product or preservative.
Inspect robotic systems or isolation technology, such as La Calhene units
used for sterility testing. These units allow product withdrawal in the
absence of people. If an initial test failure is noted in a sample tested in
such a system, it could be very difficult to justify release based on a
retest, particularly if test controls are negative.
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Evaluate the time period used for sterility test sample incubation. This
issue has been recently clarified. The USP states that samples are to be
incubated for at least 7 days, and a proposal has been made to change the
USP to require a period of 14 days incubation. You are expected to evaluate
the specific analytical procedure and the product for the proper incubation
period. Seven days may be insufficient, particularly when slow growing
organisms have been identified. Media fill, environmental, sterility test
results and other data should be reviewed to assure the absence of slow
growing organisms. Also, you should compare the methods being used for
incubation to determine if they conform to those listed in approved or
pending applications.
V. METHODOLOGY AND
Determine the source of test procedures. Manufacturers derive test
procedures from several sources, including the USP, BAM and other
microbiological references. It would be virtually impossible to completely
validate test procedures for every organism that may be objectionable.
However, it is a good practice to assure that inhibitory substances in
samples are neutralized.
During inspections, including pre-approval inspections, evaluate
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the
methodology for microbiological testing. For example, we expect test methods
to identify the presence of organisms such as Pseudomonas cepacia or other
Pseudomonas species that may be objectional or present a hazard to the user.
Where pre-approval inspections are being conducted, compare the method being
used against the one submitted in the application. Also verify that the
laboratory has the equipment necessary to perform the tests and that the
equipment was available and in good operating condition on the dates of
critical testing.
The USP states that an alternate method may be substituted for compendial
tests, provided it has been properly validated as giving equivalent or better results.
You may find that dehydrated media are being used for the preparation of
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media. Good practice includes the periodic challenge of prepared media with
low levels of organisms. This includes USP indicator organisms as well as
normal flora. The capability of the media to promote the growth of organisms
may be affected by the media preparation process, sterilization (overheating) and storage. These represent important considerations in any
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inspection and in the good management of a microbiology laboratory.
VI. DATA STORAGE
Evaluate the test results that have been entered in either logbooks or on
loose analytical sheets. While some manufacturers may be reluctant to
provide tabulations, summaries, or printouts of microbiological test
results, this data should be reviewed for the identification of potential
microbial problems in processing. When summaries of this data are not
available the inspection team is expected to review enough data to construct
their own summary of the laboratory test results and quality control
program.
Some laboratories utilize preprinted forms only for recording test data.
Some laboratories have also pointed out that the only way microbiological
test data could be reviewed during inspections would be to review individual
batch records. However, in most cases, preprinted forms are in multiple
copies with a second or third copy in a central file. Some companies use
log-books for recording data. These logbooks should also be reviewed.
Additionally, many manufacturers are equipped with an automated microbial
system, such as a Vitek, for the identification of microorganisms. Logs of
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such testing, along with the identification of the source of the sample, are
also of value in the identification of potential microbial problems in processing.
The utilization of automated systems for the identification of microorganisms is relatively common in the parenteral manufacturer where
isolates from the environment, water systems, validation and people are
routinely identified.
Microbiologists in our Baltimore District are expert on the use of automated
microbic analytical systems. They were the first FDA laboratory to use such
equipment and have considerable experience in validating methods for these
pieces of equipment. Contact the Baltimore District laboratory for
information or questions about these systems. Plants with heavy utilization
of these pieces of equipment should be inspected by individuals from the
Baltimore District laboratory.
VII. MANAGEMENT REVIEW
Microbiological test results represent one of the more difficult areas for
the evaluation and interpretation of data. These evaluations require
extensive training and experience in microbiology. Understanding the
methodology, and more importantly, understanding the limitations of the test
present the more difficult issues. For example, a manufacturer
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found high
counts of Enterobacter cloacae in their oral dosage form product derived
from a natural substance. Since they did not isolate E. coli, they released
the product. FDA analysis found E. cloacae in most samples from the batch
and even E. coli in one sample. In this case management failed to recognize
that microbiological contamination might not be uniform, that other
organisms may mask the presence of certain organisms when identification
procedures are performed, and that microbiological testing is far from
absolute. The inspection must consider the relationship between the
organisms found in the samples and the potential for the existence of other
objectionable conditions. For example, it is logical to assume that if the
process would allow E. cloacae to be present, it could also allow the
presence of the objectionable indicator organism. The microbiologist should evaluate this potential by considering such factors as methodology, and the
growth conditions of the sample as well as other fundamental factors
associated with microbiological analysis.
Evaluate management's program to audit the quality of the laboratory work
performed by outside contractors.
VIII. CONTRACT TESTING
LABORATORIES
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Many manufacturers contract with private or independent testing laboratories
to analyze their products. Since, these laboratories will conduct only the
tests that the manufacturer requests, determine the specific instructions
given to the contractor. Evaluate these instructions to assure that
necessary testing will be completed. For example, in a recent inspection of
a topical manufacturer, total plate count and testing for the USP indicator
organisms were requested. The control laboratory performed this testing only
and did not look for other organisms that would be objectionable based on
the product's intended use.
Analytical results, particularly for those articles in which additional or
retesting is conducted, should be reviewed. Test reports should be provided
to the manufacturer for tests conducted. It is not unusual to see contract
laboratories fail to provide complete results, with both failing as well as
passing results.
Bacteriostasis/fungiostasis testing must be performed either by the contract
lab or the manufacturer. These test results must be negative otherwise any
sterility test results obtained by the contractor on the product may not be valid.
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